Isidore Rigoutsos : rechercher sur Z-Library

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1

Genomic analysis of immunity in a Urochordate and the emergence of the vertebrate immune system: “waiting for Godot”

Kaoru Azumi, Rosaria Santis, Anthony Tomaso, Isidore Rigoutsos, Fumiko Yoshizaki, Maria Rosaria Pinto, Rita Marino, Kazuhito Shida, Makoto Ikeda, Masami Ikeda, Masafumi Arai, Yasuhito Inoue, Toshio Sh

Journal:

Année:

2003

Langue:

english

Fichier:

PDF, 312 KB

english, 2003

2

MINTbase v2.0: a comprehensive database for tRNA-derived fragments that includes nuclear and mitochondrial fragments from all The Cancer Genome Atlas projects

Pliatsika, Venetia, Loher, Phillipe, Magee, Rogan, Telonis, Aristeidis G, Londin, Eric, Shigematsu, Megumi, Kirino, Yohei, Rigoutsos, Isidore

Journal:

Nucleic Acids Research

Année:

2018

Langue:

english

Fichier:

PDF, 3.04 MB

english, 2018

3

TeXP: Deconvolving the effects of pervasive and autonomous transcription of transposable elements

Navarro, Fabio CP, Hoops, Jacob, Bellfy, Lauren, Cerveira, Eliza, Zhu, Qihui, Zhang, Chengsheng, Lee, Charles, Gerstein, Mark B., Rigoutsos, Isidore

Journal:

PLoS Computational Biology

Année:

2019

Langue:

english

Fichier:

PDF, 2.12 MB

english, 2019

4

Dictionary building via unsupervised hierarchical motif discovery in the sequence space of natural proteins

Isidore Rigoutsos, Aris Floratos, Christos Ouzounis, Yuan Gao, Laxmi Parida

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

1999

Langue:

english

Fichier:

PDF, 306 KB

english, 1999

5

The Emergence of Pattern Discovery Techniques in Computational Biology

Isidore Rigoutsos, Aris Floratos, Laxmi Parida, Yuan Gao, Daniel Platt

Journal:

Metabolic Engineering

Année:

2000

Langue:

english

Fichier:

PDF, 675 KB

english, 2000

6

Data mining and clinical data repositories: Insights from a 667,000 patient data set

Irene M. Mullins, Mir S. Siadaty, Jason Lyman, Ken Scully, Carleton T. Garrett, W. Greg Miller, Rudy Muller, Barry Robson, Chid Apte, Sholom Weiss, Isidore Rigoutsos, Daniel Platt, Simona Cohen, Willi

Journal:

Computers in Biology and Medicine

Année:

2006

Langue:

english

Fichier:

PDF, 272 KB

english, 2006

7

Global secondary structure packing angle bias in proteins

Daniel E. Platt, Concettina Guerra, Giuseppe Zanotti, Isidore Rigoutsos

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2003

Langue:

english

Fichier:

PDF, 379 KB

english, 2003

8

Sensitive detection of sequence similarity using combinatorial pattern discovery: A challenging study of two distantly related protein families

Nikos Darzentas, Isidore Rigoutsos, Christos A. Ouzounis

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2005

Langue:

english

Fichier:

PDF, 1.01 MB

english, 2005

9

Insights into the Regulation of a Common Variant ofHMGA2Associated with Human Height During Embryonic Development

Yvonne Tay, Sabrina Peter, Isidore Rigoutsos, Paulette Barahona, Sohail Ahmed, Peter Dröge

Journal:

Stem Cell Reviews and Reports

Année:

2009

Langue:

english

Fichier:

PDF, 268 KB

english, 2009

10

Gene-expression forum: Decoy for microRNAs

Rigoutsos, Isidore, Furnari, Frank

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 195 KB

english, 2010

11

A linguistic model for the rational design of antimicrobial peptides

Loose, Christopher, Jensen, Kyle, Rigoutsos, Isidore, Stephanopoulos, Gregory

Journal:

Année:

2006

Langue:

english

Fichier:

PDF, 165 KB

english, 2006

12

MicroRNAs to Nanog, Oct4 and Sox2 coding regions modulate embryonic stem cell differentiation

Tay, Yvonne, Zhang, Jinqiu, Thomson, Andrew M., Lim, Bing, Rigoutsos, Isidore

Journal:

Année:

2008

Langue:

english

Fichier:

PDF, 605 KB

english, 2008

13

MicroRNAs to Nanog, Oct4 and Sox2 coding regions modulate embryonic stem cell differentiation

Tay, Yvonne, Zhang, Jinqiu, Thomson, Andrew M., Lim, Bing, Rigoutsos, Isidore

Journal:

Année:

2009

Fichier:

PDF, 92 KB

2009

14

BLOSUM62 miscalculations improve search performance

Styczynski, Mark P, Jensen, Kyle L, Rigoutsos, Isidore, Stephanopoulos, Gregory

Journal:

Nature Biotechnology

Année:

2008

Langue:

english

Fichier:

PDF, 182 KB

english, 2008

15

Arginine methylation of Piwi proteins catalysed by dPRMT5 is required for Ago3 and Aub stability

Kirino, Yohei, Kim, Namwoo, de Planell-Saguer, Mariàngels, Khandros, Eugene, Chiorean, Stephanie, Klein, Peter S., Rigoutsos, Isidore, Jongens, Thomas A., Mourelatos, Zissimos

Journal:

Nature Cell Biology

Année:

2009

Langue:

english

Fichier:

PDF, 1.89 MB

english, 2009

16

Use of simulated data sets to evaluate the fidelity of metagenomic processing methods

Mavromatis, Konstantinos, Ivanova, Natalia, Barry, Kerrie, Shapiro, Harris, Goltsman, Eugene, McHardy, Alice C, Rigoutsos, Isidore, Salamov, Asaf, Korzeniewski, Frank, Land, Miriam

Journal:

Année:

2007

Langue:

english

Fichier:

PDF, 332 KB

english, 2007

17

Accurate phylogenetic classification of variable-length DNA fragments

McHardy, Alice Carolyn, Martín, Héctor García, Tsirigos, Aristotelis, Hugenholtz, Philip, Rigoutsos, Isidore

Journal:

Année:

2006

Langue:

english

Fichier:

PDF, 324 KB

english, 2006

18

Molecular moment similarity between clozapine and substituted [(4-phenylpiperazinyl)-methyl] benzamides: Selective dopamine D4 agonists

B.D. Silverman, Mike C. Pitman, Daniel.E. Platt, Isidore Rigoutsos

Journal:

Journal of Computer-Aided Molecular Design

Année:

1998

Langue:

english

Fichier:

PDF, 70 KB

english, 1998

19

An Approximation Algorithm for Alignment of Multiple Sequences using Motif Discovery

Laxmi Parida, Aris Floratos, Isidore Rigoutsos

Journal:

Journal of Combinatorial Optimization

Année:

1999

Langue:

english

Fichier:

PDF, 850 KB

english, 1999

20

Comparative molecular moment analysis (CoMMA)

B. David Silverman, Daniel E. Platt, Mike Pitman, Isidore Rigoutsos

Journal:

Perspectives in Drug Discovery and Design

Année:

1998

Langue:

english

Fichier:

PDF, 73 KB

english, 1998

21

Evolution of distinct EGF domains with specific functions

Merridee A. Wouters, Isidore Rigoutsos, Carmen K. Chu, Lina L. Feng, Duncan B. Sparrow, Sally L. Dunwoodie

Journal:

Protein Science

Année:

2005

Langue:

english

Fichier:

PDF, 1.38 MB

english, 2005

22

MicroRNA-134 Modulates the Differentiation of Mouse Embryonic Stem Cells, Where It Causes Post-Transcriptional Attenuation of Nanog and LRH1

Yvonne M.-S. Tay, Wai-Leong Tam, Yen-Sin Ang, Philip M. Gaughwin, Henry Yang, Weijia Wang, Rubing Liu, Joshy George, Huck-Hui Ng, Ranjan J. Perera, Thomas Lufkin, Isidore Rigoutsos, Andrew M. Thomson,

Journal:

Année:

2008

Langue:

english

Fichier:

PDF, 4.67 MB

english, 2008

23

A Bayesian Approach to Model Matching with Geometric Hashing

Isidore Rigoutsos, Robert Hummel

Journal:

Computer Vision and Image Understanding

Année:

1995

Fichier:

PDF, 1.30 MB

1995

24

Short RNAs: How Big Is This Iceberg?

Isidore Rigoutsos

Journal:

Current Biology

Année:

2010

Langue:

english

Fichier:

PDF, 574 KB

english, 2010

25

MicroRNA 125a and its regulation of the p53 tumor suppressor gene

Yingjie Zhang, Jin-Song Gao, Xiaoli Tang, Lynne D. Tucker, Peter Quesenberry, Isidore Rigoutsos, Bharat Ramratnam

Journal:

Année:

2009

Langue:

english

Fichier:

PDF, 1.07 MB

english, 2009

26

The Evi1, microRNA-143, K-Ras axis in colon cancer

Jin-Song Gao, Yingjie Zhang, Xiaoli Tang, Lynne D. Tucker, Patrick M. Tarwater, Peter J. Quesenberry, Isidore Rigoutsos, Bharat Ramratnam

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.02 MB

english, 2011

27

Non-α-helical elements modulate polytopic membrane protein architecture

R.Peter Riek, Isidore Rigoutsos, Jiri Novotny, Robert M Graham

Journal:

Journal of Molecular Biology

Année:

2001

Langue:

english

Fichier:

PDF, 1.18 MB

english, 2001

28

In silico structural and functional analysis of the human cytomegalovirus (HHV5) genome

Jiri Novotny, Isidore Rigoutsos, David Coleman, Thomas Shenk

Journal:

Journal of Molecular Biology

Année:

2001

Langue:

english

Fichier:

PDF, 365 KB

english, 2001

29

A Pattern-Based Method for the Identification of MicroRNA Binding Sites and Their Corresponding Heteroduplexes

Kevin C. Miranda, Tien Huynh, Yvonne Tay, Yen-Sin Ang, Wai-Leong Tam, Andrew M. Thomson, Bing Lim, Isidore Rigoutsos

Journal:

Année:

2006

Langue:

english

Fichier:

PDF, 1.16 MB

english, 2006

30

Coding-Independent Regulation of the Tumor Suppressor PTEN by Competing Endogenous mRNAs

Yvonne Tay, Lev Kats, Leonardo Salmena, Dror Weiss, Shen Mynn Tan, Ugo Ala, Florian Karreth, Laura Poliseno, Paolo Provero, Ferdinando Di Cunto, Judy Lieberman, Isidore Rigoutsos, Pier Paolo Pandolfi

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.03 MB

english, 2011

31

What's in the mix: phylogenetic classification of metagenome sequence samples

Alice C. McHardy, Isidore Rigoutsos

Journal:

Current Opinion in Microbiology

Année:

2007

Langue:

english

Fichier:

PDF, 121 KB

english, 2007

32

OMiR: Identification of associations between OMIM diseases and microRNAs

Simona Rossi, Aristotelis Tsirigos, Antonio Amoroso, Nicoletta Mascellani, Isidore Rigoutsos, George A. Calin, Stefano Volinia

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 301 KB

english, 2011

33

microRNAs in colon cancer: A roadmap for discovery

Simona Rossi, Antonio Fabio Di Narzo, Pieter Mestdagh, Bart Jacobs, Fredrik T. Bosman, Bengt Gustavsson, Bernard Majoie, Arnaud Roth, Jo Vandesompele, Isidore Rigoutsos, Mauro Delorenzi, Sabine Tejpar

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 239 KB

english, 2012

34

The microRNAs within the DLK1-DIO3 genomic region: involvement in disease pathogenesis

Benetatos, Leonidas, Hatzimichael, Eleftheria, Londin, Eric, Vartholomatos, George, Loher, Phillipe, Rigoutsos, Isidore, Briasoulis, Evangelos

Journal:

Cellular and Molecular Life Sciences

Année:

2013

Langue:

english

Fichier:

PDF, 493 KB

english, 2013

35

Molecular dynamics simulations of Ago silencing complexes reveal a large repertoire of admissible ‘seed-less’ targets

Xia, Zhen, Clark, Peter, Huynh, Tien, Loher, Phillipe, Zhao, Yue, Chen, Huang-Wen, Rigoutsos, Isidore, Zhou, Ruhong

Journal:

Scientific Reports

Année:

2012

Langue:

english

Fichier:

PDF, 3.66 MB

english, 2012

36

The human platelet: strong transcriptome correlations among individuals associate weakly with the platelet proteome

Londin, Eric R, Hatzimichael, Eleftheria, Loher, Phillipe, Edelstein, Leonard, Shaw, Chad, Delgrosso, Kathleen, Fortina, Paolo, Bray, Paul F, McKenzie, Steven E, Rigoutsos, Isidore

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 1.09 MB

english, 2014

37

Argonaute CLIP-Seq reveals miRNA targetome diversity across tissue types

Clark, Peter M., Loher, Phillipe, Quann, Kevin, Brody, Jonathan, Londin, Eric R., Rigoutsos, Isidore

Journal:

Scientific Reports

Année:

2014

Langue:

english

Fichier:

PDF, 2.71 MB

english, 2014

38

HuR is a post-transcriptional regulator of core metabolic enzymes in pancreatic cancer

Burkhart, Richard A, Pineda, Danielle M, Chand, Saswati N, Romeo, Carmella, Londin, Eric R, Karoly, Edward D, Cozzitorto, Joseph A, Rigoutsos, Isidore, Yeo, Charles J, Brody, Jonathan R, Winter, Jorda

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 2.58 MB

english, 2013

39

“Off-Spotter”: very fast and exhaustive enumeration of genomic lookalikes for designing CRISPR/Cas guide RNAs

Pliatsika, Venetia, Rigoutsos, Isidore

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 1.17 MB

english, 2015

40

Reply to Backes and Keller: Identification of novel tissue-specific and primate-specific human microRNAs

Londin, Eric, Loher, Phillipe, Rigoutsos, Isidore

Journal:

Proceedings of the National Academy of Sciences

Année:

2015

Langue:

english

Fichier:

PDF, 528 KB

english, 2015

41

Mitochondrial tRNA-lookalikes in nuclear chromosomes: Could they be functional?

Telonis, Aristeidis G, Kirino, Yohei, Rigoutsos, Isidore

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 221 KB

english, 2015

42

Nuclear and mitochondrial tRNA-lookalikes in the human genome

Telonis, Aristeidis G., Loher, Phillipe, Kirino, Yohei, Rigoutsos, Isidore

Journal:

Frontiers in Genetics

Année:

2014

Langue:

english

Fichier:

PDF, 3.22 MB

english, 2014

43

Multi-study Integration of Brain Cancer Transcriptomes Reveals Organ-Level Molecular Signatures

Sung, Jaeyun, Kim, Pan-Jun, Ma, Shuyi, Funk, Cory C., Magis, Andrew T., Wang, Yuliang, Hood, Leroy, Geman, Donald, Price, Nathan D., Rigoutsos, Isidore

Journal:

PLoS Computational Biology

Année:

2013

Langue:

english

Fichier:

PDF, 1.78 MB

english, 2013

44

Alu and B1 Repeats Have Been Selectively Retained in the Upstream and Intronic Regions of Genes of Specific Functional Classes

Tsirigos, Aristotelis, Rigoutsos, Isidore, Stormo, Gary D.

Journal:

PLoS Computational Biology

Année:

2009

Langue:

english

Fichier:

PDF, 390 KB

english, 2009

45

Biomolecular Events in Cancer Revealed by Attractor Metagenes

Cheng, Wei-Yi, Yang, Tai-Hsien Ou, Anastassiou, Dimitris, Rigoutsos, Isidore

Journal:

PLoS Computational Biology

Année:

2013

Langue:

english

Fichier:

PDF, 804 KB

english, 2013

46

Distributions of Transposable Elements Reveal Hazardous Zones in Mammalian Introns

Zhang, Ying, Romanish, Mark T., Mager, Dixie L., Rigoutsos, Isidore

Journal:

PLoS Computational Biology

Année:

2011

Langue:

english

Fichier:

PDF, 1.00 MB

english, 2011

47

A Computational Approach to Identifying Gene-microRNA Modules in Cancer

Jin, Daeyong, Lee, Hyunju, Rigoutsos, Isidore

Journal:

PLoS Computational Biology

Année:

2015

Langue:

english

Fichier:

PDF, 2.60 MB

english, 2015

48

Identification of Allelic Imbalance with a Statistical Model for Subtle Genomic Mosaicism

Xia, Rui, Vattathil, Selina, Scheet, Paul, Rigoutsos, Isidore

Journal:

PLoS Computational Biology

Année:

2014

Langue:

english

Fichier:

PDF, 2.57 MB

english, 2014

49

Sex hormone-dependent tRNA halves enhance cell proliferation in breast and prostate cancers

Honda, Shozo, Loher, Phillipe, Shigematsu, Megumi, Palazzo, Juan P., Suzuki, Ryusuke, Imoto, Issei, Rigoutsos, Isidore, Kirino, Yohei

Journal:

Proceedings of the National Academy of Sciences

Année:

2015

Langue:

english

Fichier:

PDF, 1.32 MB

english, 2015

50

Sharing and Specificity of Co-expression Networks across 35 Human Tissues

Pierson, Emma, Koller, Daphne, Battle, Alexis, Mostafavi, Sara, Rigoutsos, Isidore

Journal:

PLoS Computational Biology

Année:

2015

Langue:

english

Fichier:

PDF, 3.55 MB

english, 2015